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1

Archaea and the origin of eukaryotes

Eme, Laura, Spang, Anja, Lombard, Jonathan, Stairs, Courtney W., Ettema, Thijs J. G.

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 757 KB

english, 2017

2

Deep mitochondrial origin outside the sampled alphaproteobacteria

Martijn, Joran, Vosseberg, Julian, Guy, Lionel, Offre, Pierre, Ettema, Thijs J. G.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.87 MB

english, 2018

3

24 Reconstructing the tempestuous evolution of the mitochondrial ribosomal proteome

Paulien Smits, Jan A.M. Smeitink, Lambert P. van den Heuvel, Martijn A. Huynen, Thijs J.G. Ettema

Journal:

Year:

2007

Language:

english

File:

PDF, 56 KB

english, 2007

4

The archaeal ‘TACK’ superphylum and the origin of eukaryotes

Lionel Guy, Thijs J.G. Ettema

Journal:

Trends in Microbiology

Year:

2011

Language:

english

File:

PDF, 365 KB

english, 2011

5

Complex archaea that bridge the gap between prokaryotes and eukaryotes

Spang, Anja, Saw, Jimmy H., Jørgensen, Steffen L., Zaremba-Niedzwiedzka, Katarzyna, Martijn, Joran, Lind, Anders E., van Eijk, Roel, Schleper, Christa, Guy, Lionel, Ettema, Thijs J. G.

Journal:

Year:

2015

Language:

english

File:

PDF, 951 KB

english, 2015

6

Archaeal MBF1 binds to 30S and 70S ribosomes via its helix–turn–helix domain

Blombach, Fabian, Launay, Helene, Snijders, Ambrosius P. L., Zorraquino, Violeta, Wu, Hao, de Koning, Bart, Brouns, Stan J. J., Ettema, Thijs J. G., Camilloni, Carlo, Cavalli, Andrea, Vendruscolo, Mic

Journal:

Biochemical Journal

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

7

An archaeal origin for the actin cytoskeleton: Implications for eukaryogenesis

Bernander, Rolf, Lind, Anders E., Ettema, Thijs J. G.

Journal:

Communicative & Integrative Biology

Year:

2011

Language:

english

File:

PDF, 876 KB

english, 2011

8

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism

Spang, Anja, Stairs, Courtney W., Dombrowski, Nina, Eme, Laura, Lombard, Jonathan, Caceres, Eva F., Greening, Chris, Baker, Brett J., Ettema, Thijs J. G.

Journal:

Nature Microbiology

Year:

2019

Language:

english

File:

PDF, 1.61 MB

english, 2019

9

Convergent evolution of hydrogenosomes from mitochondria by gene transfer and loss

Lewis, William H, Lind, Anders E, Sendra, Kacper M, Onsbring, Henning, Williams, Tom A, Esteban, Genoveva F, Hirt, Robert P, Ettema, Thijs J G, Embley, T Martin, Battistuzzi, Fabia Ursula

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1.86 MB

english, 2019

10

Innovations to culturing the uncultured microbial majority

Lewis, William H., Tahon, Guillaume, Geesink, Patricia, Sousa, Diana Z., Ettema, Thijs J. G.

Journal:

Nature Reviews Microbiology

Year:

2020

File:

PDF, 3.59 MB

2020

11

Rubrenolide, total synthesis and assignment of its absolute configuration.

Takao Saito, Lambertus Thijs, Gert-Jan Ettema, Binne Zwanenburg

Journal:

Tetrahedron Letters

Year:

1993

Language:

english

File:

PDF, 218 KB

english, 1993

12

The Lrp family of transcriptional regulators

Arie B. Brinkman, Thijs J. G. Ettema, Willem M. De Vos, John Van Der Oost

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 204 KB

english, 2003

13

The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) ofSulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner–Doudoroff pathway

Thijs J. G. Ettema, Hatim Ahmed, Ans C. M. Geerling, John van der Oost, Bettina Siebers

Journal:

Year:

2008

Language:

english

File:

PDF, 436 KB

english, 2008

14

An actin-based cytoskeleton in archaea

Thijs J. G. Ettema, Ann-Christin Lindås, Rolf Bernander

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 882 KB

english, 2011

15

Discovering novel biology by in silico archaeology

Ettema, Thijs J. G., de Vos, Willem M., van der Oost, John

Journal:

Nature Reviews Microbiology

Year:

2005

Language:

english

File:

PDF, 412 KB

english, 2005

16

Modularity in the gain and loss of genes: applications for function prediction

Thijs Ettema, John van der Oost, Martijn Huynen

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 38 KB

english, 2001

17

TRASH: a novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance

Thijs J.G. Ettema, Martijn A. Huynen, Willem M. de Vos, John van der Oost

Journal:

Trends in Biochemical Sciences

Year:

2003

Language:

english

File:

PDF, 240 KB

english, 2003

18

Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing

Sara Beier, Vani Mohit, Thijs J. G. Ettema, Örjan Östman, Lars J. Tranvik, Stefan Bertilsson

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 378 KB

english, 2012

19

FtsZ-less cell division in archaea and bacteria

Rolf Bernander, Thijs JG Ettema

Journal:

Current Opinion in Microbiology

Year:

2010

Language:

english

File:

PDF, 222 KB

english, 2010

20

Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius

Julia Reimann, Kerstin Lassak, Sunia Khadouma, Thijs J. G. Ettema, Nuan Yang, Arnold J. M. Driessen, Andreas Klingl, Sonja-Verena Albers

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

21

From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell

Martijn, Joran, Ettema, Thijs J.G.

Journal:

Biochemical Society Transactions

Year:

2013

Language:

english

File:

PDF, 291 KB

english, 2013

22

‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

Guy, Lionel, Spang, Anja, Saw, Jimmy H, Ettema, Thijs J G

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

23

Comparative and functional analysis of the archaeal cell cycle

Bernander, Rolf, Lundgren, Magnus, Ettema, Thijs J. G.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.17 MB

english, 2010

24

Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle

Ettema, Thijs J. G., Lindås, Ann-Christin, Hjort, Karin, Poplawski, Andrzej B., Kaessmann, Henrik, Grogan, Dennis W., Kelman, Zvi, Andersson, Anders F., Pelve, Erik A., Lundgren, Magnus, Svärd, Staffa

Journal:

Molecular Microbiology

Year:

2014

Language:

english

File:

PDF, 8.32 MB

english, 2014

25

Identification and Molecular Characterization of a Novel Type of α-galactosidase from Pyrococcus furiosus

van Lieshout, Johan F.T., Verhees, Corné H., Ettema, Thijs J.G., van der Sar, Sjaak, Imamura, Hiromi, Matsuzawa, Hiroshi, van der Oost, John, de Vos, Willem M.

Journal:

Biocatalysis and Biotransformation

Year:

2003

Language:

english

File:

PDF, 647 KB

english, 2003

26

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

Martijn, Joran, Schulz, Frederik, Zaremba-Niedzwiedzka, Katarzyna, Viklund, Johan, Stepanauskas, Ramunas, Andersson, Siv G E, Horn, Matthias, Guy, Lionel, Ettema, Thijs J G

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 3.43 MB

english, 2015

27

Moderators of the longitudinal relationship between the perceived physical environment and outside play in children: the KOALA birth cohort study

Remmers, Teun, Van Kann, Dave, Gubbels, Jessica, Schmidt, Swantje, de Vries, Sanne, Ettema, Dick, Kremers, Stef, Thijs, Carel

Journal:

International Journal of Behavioral Nutrition and Physical Activity

Year:

2014

Language:

english

File:

PDF, 263 KB

english, 2014

28

A R ickettsiales symbiont of amoebae with ancient features

Schulz, Frederik, Martijn, Joran, Wascher, Florian, Lagkouvardos, Ilias, Kostanjšek, Rok, Ettema, Thijs J. G., Horn, Matthias

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 3.25 MB

english, 2015

29

Cell division and the ESCRT complex

Ettema, Thijs J. G., Bernander, Rolf

Journal:

Communicative & Integrative Biology

Year:

2009

Language:

english

File:

PDF, 460 KB

english, 2009

30

Evolution: Mitochondria in the second act

Ettema, Thijs J. G.

Journal:

Year:

2016

Language:

english

File:

PDF, 531 KB

english, 2016

31

Tracing the archaeal origins of eukaryotic membrane-trafficking system building blocks

Klinger, Christen M., Spang, Anja, Dacks, Joel B., Ettema, Thijs J.G.

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 3.97 MB

english, 2016

32

The semi-phosphorylative Entner–Doudoroff pathway in hyperthermophilic archaea: a re-evaluation

Ahmed, Hatim, Ettema, Thijs J. G., Tjaden, Britta, Geerling, Ans C. M., van der Oost, John, Siebers, Bettina

Journal:

Biochemical Journal

Year:

2005

Language:

english

File:

PDF, 619 KB

english, 2005

33

Biochemical adaptations of two sugar kinases from the hyperthermophilic archaeon Pyrococcus furiosus

VERHEES, Corné H., KOOT, Denise G.M., ETTEMA, Thijs J.G., DIJKEMA, Cor, de VOS, Willem M., van der OOST, John

Journal:

Biochemical Journal

Year:

2002

Language:

english

File:

PDF, 304 KB

english, 2002

34

Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis

Hammond, Maria, Homa, Felix, Andersson-Svahn, Helene, Ettema, Thijs J. G., Joensson, Haakan N.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

35

Microbial diversity: The tree of life comes of age

Spang, Anja, Ettema, Thijs J. G.

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 286 KB

english, 2016

36

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

Baker, Brett J., Saw, Jimmy H., Lind, Anders E., Lazar, Cassandre Sara, Hinrichs, Kai-Uwe, Teske, Andreas P., Ettema, Thijs J. G.

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 559 KB

english, 2016

37

Corrigendum: Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

Baker, Brett J., Saw, Jimmy H., Lind, Anders E., Lazar, Cassandre Sara, Hinrichs, Kai-Uwe, Teske, Andreas P., Ettema, Thijs J. G.

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 37 KB

english, 2016

38

Microbial community assembly and evolution in subseafloor sediment

Starnawski, Piotr, Bataillon, Thomas, Ettema, Thijs J. G., Jochum, Lara M., Schreiber, Lars, Chen, Xihan, Lever, Mark A., Polz, Martin F., Jørgensen, Bo B., Schramm, Andreas, Kjeldsen, Kasper U.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 907 KB

english, 2017

39

The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins

Marshall, Ian P. G., Starnawski, Piotr, Cupit, Carina, Cáceres, Eva Fernández, Ettema, Thijs J. G., Schramm, Andreas, Kjeldsen, Kasper U.

Journal:

Environmental Microbiology Reports

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

40

Integrative modeling of gene and genome evolution roots the archaeal tree of life

Williams, Tom A., Szöllősi, Gergely J., Spang, Anja, Foster, Peter G., Heaps, Sarah E., Boussau, Bastien, Ettema, Thijs J. G., Embley, T. Martin

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.66 MB

english, 2017

41

Archaeal evolution: The methanogenic roots of Archaea

Spang, Anja, Ettema, Thijs J. G.

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 134 KB

english, 2017

42

Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon

Hennell James, Rory, Caceres, Eva F., Escasinas, Alex, Alhasan, Haya, Howard, Julie A., Deery, Michael J., Ettema, Thijs J. G., Robinson, Nicholas P.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 3.19 MB

english, 2017

43

Archaea and the origin of eukaryotes

Eme, Laura, Spang, Anja, Lombard, Jonathan, Stairs, Courtney W., Ettema, Thijs J. G.

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 69 KB

english, 2017

44

RNA Sequencing of Stentor Cell Fragments Reveals Transcriptional Changes during Cellular Regeneration

Onsbring, Henning, Jamy, Mahwash, Ettema, Thijs J.G.

Journal:

Current Biology

Year:

2018

Language:

english

File:

PDF, 1.51 MB

english, 2018

45

Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

Yutin, Natalya, Bäckström, Disa, Ettema, Thijs J. G., Krupovic, Mart, Koonin, Eugene V.

Journal:

Virology Journal

Year:

2018

Language:

english

File:

PDF, 4.98 MB

english, 2018

46

Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution

Spang, Anja, Martijn, Joran, Saw, Jimmy H., Lind, Anders E., Guy, Lionel, Ettema, Thijs J. G.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.90 MB

english, 2013

47

Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle

Lind, Anders E., Lewis, William H., Spang, Anja, Guy, Lionel, Embley, T. Martin, Ettema, Thijs J. G.

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

48

Complex evolutionary history of translation Elongation Factor 2 and diphthamide biosynthesis in Archaea and parabasalids

Narrowe, Adrienne B, Spang, Anja, Stairs, Courtney W, Caceres, Eva F, Baker, Brett J, Miller, Christopher S, Ettema, Thijs J G

Journal:

Genome Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 2.75 MB

english, 2018

49

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

Alneberg, Johannes, Karlsson, Christofer M. G., Divne, Anna-Maria, Bergin, Claudia, Homa, Felix, Lindh, Markus V., Hugerth, Luisa W., Ettema, Thijs J. G., Bertilsson, Stefan, Andersson, Anders F., Pin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.20 MB

english, 2018

50

The eukaryotic ancestor shapes up

Eme, Laura, Ettema, Thijs J. G.

Journal:

Year:

2018

Language:

english

File:

PDF, 547 KB

english, 2018

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